Reference materials for GEO 389V are available in the Geology Library open reserve files, located in the hall on the third floor (fourth, according to the elevators) of the Geology Building, in a green filing cabinet, under "Rowe." Papers from the GEO 369 files will also be found in this cabinet: these may be considered supplementary readings, and are also listed below.

 

USE THE INDENTED LIST BELOW TO FIND PAPERS ON CLADES DISCUSSED IN CLASS, OR BROWSE BY TOPIC:

 

Papers available on-line and hyperlinked are in blue.

Papers on the "first CD" are in green.

Papers on the "second CD" are in purple.

Papers on the "third CD" are in yellow.

Duplicates are mixed.

 

For information on citation format, please see the class formatting protocol page.

 

TOPICS:

Teeth 

 

Biomineralization

 

Browse by Clade

 

Completeness, Stratigraphy and The Role of Fossils

 

Development

 

General Text Resources

 

Phylogenetic Nomenclature

 

Phylogenetic Reconstruction

 

 


 

 

BROWSE BY CLADE:

 

Notes:

·         When a clade contains clades for which there are other references, check the most inclusive clade for general references and papers on “primitive” members of the group. When in doubt, papers may be listed with others mentioned on the same day.

 

·         Taxa with an asterisk are considered in further detail on the next sequential indented list.

 

·         Some references are listed multiple times, in the hopes of helping you find them.

 

·         Remember we are using “crown group” definitions for taxa, so you may find some taxa where you wouldn’t expect them. I have tried to account for this by cross-listing unexpected taxa (e.g., Arkarua is under Deuterostomata and Echinodermata). Overall, the use of crown group nomenclature is sloppy and inconsistent here... we'll all just have to find some way through the horror of it all.

 

 

 

LIST 1: BILATERIA sans VERTEBRATA

 

 

Bilateria

Acoelomata

            Coelomata

                        Lophophorata

                        Protostomata

                        Deuterostomata

                                    Echinodermata

                                    “calcichordates”

                                    Hemichordata

                                    Chordata

                                                Urochordata

                                                Euchordata

                                                            Cephalochordata

                                                            Craniata

                                                                        Myxinoidea

                                                                        Heterostraci

                                                                        Vertebrata

Conodonta

Panpetromyzontida

Petromydontida

Anaspida

Galeaspida

Osteostraci

Placodermi

*Gnathostomata

 

LIST 2: VERTEBRATA on

Gnathostomata

        Chondrichthyes

        Osteichthyes

                Actinopterygii

                Sarcopterygii

                        Dipnoi

                        Acitinistia

                        Pantetrapoda

                                Panamphibia

                                        Amphibia

                                Panamniota

                                        Amniota

                                                Synapsida

                                                        Mammalia

                                                Sauropsida

                                                        Testudines

                                                        Lepidosauromorpha

                                                        Archosaurimorpha

                                                                                           

                                                                     

                                                   


 

DEUTEROSTOMATA

 

        Deuterostomia page on the Tree of Life

Dominguez, P., A. G. Jacobson and R. P. S. Jeffries. 2002. Paired gill slits in a fossil with a calcite skeleton. Nature, 417:641-644.

Gee, H. 2001. On being vetulicolian. Nature, 414:407-409.

Gheling, J. G. 1987. Earliest known echinoderm – a new Ediacaran fossil from the Pound Subgroup of South Australia. Alcheringa, 11:337-345.

Maisey, J. G. 1986. Heads and tails: a chordate phylogeny. Cladistics, 2:201-256.

Schaeffer, B. 1987. Deuterostome monophyly and phylogeny. Evolutionary Biology, 21: 179-235.

Shu, D. –G., S. Conway Morris, J. Han, L. Chen, X.-L. Zhang, Z.-F. Zhang, H.-Q. Liu, Y. Li, and J.-N. Liu. 2001. Primitive deuterostomes from the Chengjiang Lagerstätte (Lower Cambrian, China). Nature, 141:419-424.

 

ECHINODERMATA

See also “calcichordates” below

 

        Echinodermata page on the Tree of Life

Strongylocentrotus purpuratus on the Digimorph site

Pisater sp. on the Digimorph site

Cameron, C. B., J. R. Garey and B. J. Swalla. 2000. Evolution of the chordate body plan: new insights from phylogenetic analysis of deuterostome phyla. Proceedings of the National Academy of Sciences, 97:4469-4474.

Gheling, J. G. 1987. Earliest known echinoderm – a new Ediacaran fossil from the Pound Subgroup of South Australia. Alcheringa, 11:337-345.

Lowe, C. J. and G. A. Wray. 1997. Radical alterations in the roles of homeobox genes during echinoderm evolution. Nature, 389:718-721.

Popodi, E. and R. A. Raff. 2001. Hox genes in a pantameral animal. BioEssays, 23:211-214.

Smith, A. B. 1984. Classification of the Echinodermata. Palaeontology, 27:431-459.

 

“CALCICHORDATES”

 

        Chordata page on the Tree of Life

            Jaekelocarpus oklahomensis on the Digimorph site

 

Daley, P. E. J. 1992. The anatomy of the solute Girvanicystis batheri (?Chordata) from the Upper Ordovician of Scotland and a new species of Girvanicystis from the Upper Ordovician of South Wales. Zoological Journal of the Linnean Society, 105: 353-375.

Dominguez, P., A. G. Jacobson and R. P. S. Jeffries. 2002. Paired gill slits in a fossil with a calcite skeleton. Nature, 417:641-644.

Jeffries, R. P. S. and A. G. Jacobson. 1998. An episode in the ancestry of vertebrates: from mitrate to crown-group craniate. Integrative Biology, 1:115-132.

Jeffries, R. P. S.1997. A defense of calcichordates. Lethaia, 30:1-10.

Jollie, M. 1982. What are the “Calcichordata”? and the larger question of the origin of chordates. Zoological Journal of the Linnean Society, 75: 167-188.

Philip, G. M. 1979. Carpoids – Echinoderms or chordates? Biological Reviews, 54:439-471.

Sutcliffe, O. E., W. H. Südkamp and R. P. S. Jeffries. 2000. Ichnological evidence on the behaviour of mitrates: two trails associated with the Devonian mitrate Rhenocystis. Lethaia, 33:1-12.

 

HEMICHORDATA

 

        Hemichordata page on the Tree of Life

 

Cameron, C. B., J. R. Garey and B. J. Swalla. 2000. Evolution of the chordate body plan: new insights from phylogenetic analysis of deuterostome phyla. Proceedings of the National Academy of Sciences, 97:4469-4474.

Rigby, S. 1993. Graptolites come to life. Nature, 362:209-210.

 

CHORDATA

 

        Chordata page on the Tree of Life

 

Garstang, W. 1928. The morphology of the Tunicata, and its bearing on the phylogeny of the Chordata. Quaterly Journal of Microscopal Science (New Series), 72:51-187.

Jeffries, R. P. S. and A. G. Jacobson. 1998. An episode in the ancestry of vertebrates: from mitrate to crown-group craniate. Integrative Biology, 1:115-132.

Maisey, J. G. 1986. Heads and tails: a chordate phylogeny. Cladistics, 2:201-256.

 

UROCHORDATA

 

        Chordata page on the Tree of Life

 

Alldredge, A. L. 1977. House morphology and mechanisms of feeding in the Oikopleuridae (Tunicata, Appendicularia). Journal of Zoology, 181:175-188.

Cameron, C. B., J. R. Garey and B. J. Swalla. 2000. Evolution of the chordate body plan: new insights from phylogenetic analysis of deuterostome phyla. Proceedings of the National Academy of Sciences, 97:4469-4474.

Garstang, W. 1928. The morphology of the Tunicata, and its bearing on the phylogeny of the Chordata. Quaterly Journal of Microscopal Science (New Series), 72:51-187.

Jamieson, B. G. M. 1991. Subphylum Urochordata, pp. 20-48. In Fish Evolution and Systematics: Evidence from Spermatozoa. Cambridge University Press, Cambridge.

Pennisi, E. 1996. Developmental biology: tracing backbone evolution through a tunicate’s lost tail. Science, 274:1082-1083.

Shu, D. –G., L. Chen and X. –L. Zhang. 2001. An early Cambrian tunicate from China. Nature, 411: 472-473.

Swalla, B. J. and W. J. Jeffery. 1996. Requirement of the Manx gene for expression of chordate features in a tailless ascidian larva. Science, 274:1205-1208.

 

EUCHORDATA

 

        Chordata page on the Tree of Life

 

Chen, J. –Y., D. –Y. Huang and C. –W. Li. 1999. An early Cambrian craniate-like chordate. Nature, 402: 518-522.

Jeffries, R. P. S. and A. G. Jacobson. 1998. An episode in the ancestry of vertebrates: from mitrate to crown-group craniate. Integrative Biology, 1:115-132.

Naylor, G. J. P. and W. M. Brown. 1998. Amphioxus mitochondrial DNA, chordate phylogeny, and the limits of inference based on comparisons of sequences. Systematic Biology 47:61-76.

 

CEPHALOCHORDATA

 

        Chordata page on the Tree of Life

 

Briggs, D. E. G. and A. J. Kear. 1994. Decay of Branciostoma: implications for soft-tissue preservation in conodonts and other primitive chordates. Lethaia, 26:275-287.

Cameron, C. B., J. R. Garey and B. J. Swalla. 2000. Evolution of the chordate body plan: new insights from phylogenetic analysis of deuterostome phyla. Proceedings of the National Academy of Sciences, 97:4469-4474.

Naylor, G. J. P. and W. M. Brown. 1998. Amphioxus mitochondrial DNA, chordate phylogeny, and the limits of inference based on comparisons of sequences. Systematic Biology 47:61-76.

  

CRANIATA

 

        Craniata page on the Tree of Life

 

Bodznick, D. and R. G. Northcutt. 1981. Electroreception in lampreys: evidence that the earliest vertebrates were electroreceptive. Science, 212:465-467

Briggs, D. E. G. and A. J. Kear. 1994. Decay of Branciostoma: implications for soft-tissue preservation in conodonts and other primitive chordates. Lethaia, 26:275-287.

Chen, J. –Y., D. –Y. Huang and C. –W. Li. 1999. An early Cambrian craniate-like chordate. Nature, 402: 518-522.

Denison, R. H. 1956. A review of the habitat of the earliest vertebrates. Fieldiana,11:357-457.

Denison, R. H. 1961. Feeding mechanisms of Agnatha and early gnathostomes. American Zooloist, 1:177-181.

Denison, R. H. 1967. Ordovician vertebrates from western United States. Fieldiana, 16:131-192.

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gorbman, A. and A. Tamarin. 1985. Early development of oral, olfactory and adenohypophyseal structures of agnathans and its evolutionary implications, pp. 165-185. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Graham, A. and A. Smith. 2001. Patterning the pharyngeal arches. BioEssays, 23:54-61.

Holland, N. D. and J. Chen. 2001. Origin and early evolution of the vertebrates: new insights from advances in molecular biology, anatomy, and palaeontology. BioEssays, 23:142-151.

Janvier, P. 1984. The relationships of the Osteostraci and Galeaspida. Journal of Vertebrate Paleontology, 4:344-358.

Long, J. A. 1995. The Rise of Fishes: 500 million years of evolution. Johns Hopkins University Press, Baltimore. 223 p.

Maisey, J. G. 1988. Phylogeny of early vertebrate skeletal induction and ossification patterns. Evolutionary Biology, 22:1-36.

Mallatt, J. 1984. Early vertebrate evolution: pharyngeal structure and the origin of gnathostomes. Journal of Zoology, London, 204:169-183.

Mallatt, J. 1985. Reconstructing the life cycle and feeding of ancestral vertebrates, pp. 59-68. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Moy-Thomas, J. A. and R. S. Miles. 1971. Paleozoic Fishes, 2nd edition. Chapman and Hall, London. 259 p.

Northcutt, R. G. 1985. The brain and sense organs of the earliest vertebrates: reconstruction of a morphotype, pp. 81-112. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Northcutt, R. G. and C. Gans. 1983. The genesis of neural crest and epidermal placodes: a reinterpretation of vertebrate origins. Quarterly Review of Biology, 58:1-28.

Nursall, J. R. 1956. The lateral musculature and the swimming of fish. Proceedings of the Zoological Soceity of London, 126:127-143.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Ruben, J. A. and A. F. Bennett. 1980. Antiquity of vertebrate pattern of activity metabolism and its possible relation to vertebrate origins. Nature, 286:886-888.

Schultze, H. -P. and R. Cloutier (eds.). 1996. Devonian Fishes and Plants of Miguasha, Quebec, Canada. Verlag Dr. Friedrich Pfeil, Munchen. 374 pl.

Shimeld, S. M. and P. W. H. Holland. 2000. Vertebrate innovations. Proceedings of the National Academy of Sciences, 97:4449-4452.

Shu, D. –G., H. –L. Luo, S. Conway Morris, X. –L. Zhang, S. –X. Hu, L. Chen. J. Han, M. Zhu, Y. Li, and L. –Z. Chen. 1999. Lower Cambrian vertebrates from south China. Nature, 402:42-46.

Smith, M. M. and B. K. Hall. 1990. Development and evolutionary origins of vertebrate skeletogenic and odontogenic tissues. Biological Reviews, 65:277-373.

Stensiö, E. 1968. The cyclostomes with special reference to the diphyletic origin of Petromyzontida and Myxinoidea, pp. 13-71. In T. Ørvig (ed.), Current Problems of Lower Vertebrate Phylogeny. Almqvist and Wiksell, Stockholm.

Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

Zimmer, C. 2000. In search of vertebrate origins: beyond brain and bone. Science, 287: 1576-1579.

 

MYXINOIDEA

Hypertotreti page on the Tree of Life

Bardack, D. 1991. First fossil hagfish (Myxinoidea): a record from the Pennsylvanian of Illinois. Science, 254:701-703.ori

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gorbman, A. and A. Tamarin. 1985. Early development of oral, olfactory and adenohypophyseal structures of agnathans and its evolutionary implications, pp. 165-185. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Hardisty, M. W. 1979. Biology of the Cyclostomes. Chapman and Hall, London. 428 p.

Heintz, A. 1963. Phylogenetic aspects of myxinoids, pp. 9-21. In A. Brodal and R. Fänge (eds.), The Biology of Myxine. Universitetsforlaget, Olso.

Mallatt, J. and C. Paulsen. 1986. Gill ultrastructure of the pacific hagfish Eptatretus stouti. American Journal of Anatomy, 177:243-269.

Martini, F. H. 1998. Secrets of the slime hag. Scientific American, October 1998:70-75.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Northcutt, R. G. 1985. The brain and sense organs of the earliest vertebrates: reconstruction of a morphotype, pp. 81-112. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Nursall, J. R. 1956. The lateral musculature and the swimming of fish. Proceedings of the Zoological Soceity of London, 126:127-143.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Shu, D. –G., H. –L. Luo, S. Conway Morris, X. –L. Zhang, S. –X. Hu, L. Chen. J. Han, M. Zhu, Y. Li, and L. –Z. Chen. 1999. Lower Cambrian vertebrates from south China. Nature, 402:42-46.

Shu, D., S. Conway Morris, X. -L. Zhang, L. Chen, Y. Li and J. Han. 1999. A pipiscid-like fossil from the Lower Cambrian of south China. Nature, 400:746-749.

Stensiö, E. 1968. The cyclostomes with special reference to the diphyletic origin of Petromyzontida and Myxinoidea, pp. 13-71. In T. Ørvig (ed.), Current Problems of Lower Vertebrate Phylogeny. Almqvist and Wiksell, Stockholm.

Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

 

HETEROSTRACI 

Pteraspidomorphi page on the Tree of Life

Thelodonti page on the Tree of Life

Denison, R. H. 1951. Late Devonian fresh-water fishes from the western United States. Fieldiana, 11: 219-261.

Denison, R. H. 1953. Early Devonian Fishes from Utah: Part II. Heterostraci. Fieldiana, 11:289-355.

Denison, R. H. 1960. Fishes of the Devonian Holland Quarry Shale of Ohio. Fieldiana, 11:553-613.

Denison, R. H. 1963. New Silurian Heterostraci from southeastern Yukon. Fieldiana, 14:105-141.

Denison, R. H. 1964. The Cyathaspididae: a family of Silurian and Devonian jawless vertebrates. Fieldiana, 13: 311-473.

Denison, R. H. 1966. Cardiopeltis: an early Devonian Agnathan of the order Heterostraci. Fieldiana, 16:89-116.

Denison, R. H. 1966. The origin of the lateral line sensory system. American Zoologist, 6:369-370.

Denison, R. H. 1970. Revised classification of Pteraspididae with description of new forms from Wyoming. Fieldiana, 20:1-41.

Denison, R. H. 1971. On the tail of Heterostraci (Agnatha). Forma et Functio, 4:87-99.

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gagnier, P. -Y. 1989. The oldest vertebrate: a 470-million-year-old jawless fish, Sacabamaspis janvieri, from the Ordovician of Bolivia. National Geographic Research, 5:250-253.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Moy-Thomas, J. A. and R. S. Miles. 1971. Paleozoic Fishes, 2nd edition. Chapman and Hall, London. 259 p.

Schultze, H. -P. and R. Cloutier (eds.). 1996. Devonian Fishes and Plants of Miguasha, Quebec, Canada. Verlag Dr. Friedrich Pfeil, Munchen. 374 pl.

 

VERTEBRATA

Vertebrata page on the Tree of Life

Bodznick, D. and R. G. Northcutt. 1981. Electroreception in lampreys: evidence that the earliest vertebrates were electroreceptive. Science, 212:465-467

Denison, R. H. 1956. A review of the habitat of the earliest vertebrates. Fieldiana,11:357-457.

Denison, R. H. 1961. Feeding mechanisms of Agnatha and early gnathostomes. American Zooloist, 1:177-181.

Denison, R. H. 1967. Ordovician vertebrates from western United States. Fieldiana, 16:131-192.

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gorbman, A. and A. Tamarin. 1985. Early development of oral, olfactory and adenohypophysvereal structures of agnathans and its evolutionary implications, pp. 165-185. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Graham, A. and A. Smith. 2001. Patterning the pharyngeal arches. BioEssays, 23:54-61.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Holland, N. D. and J. Chen. 2001. Origin and early evolution of the vertebrates: new insights from advances in molecular biology, anatomy, and palaeontology. BioEssays, 23:142-151.

Janvier, P. 1984. The relationships of the Osteostraci and Galeaspida. Journal of Vertebrate Paleontology, 4:344-358.

Long, J. A. 1995. The Rise of Fishes: 500 million years of evolution. Johns Hopkins University Press, Baltimore. 223 p.

Maisey, J. G. 1988. Phylogeny of early vertebrate skeletal induction and ossification patterns. Evolutionary Biology, 22:1-36.

Mallatt, J. 1984. Early vertebrate evolution: pharyngeal structure and the origin of gnathostomes. Journal of Zoology, London, 204:169-183.

Mallatt, J. 1985. Reconstructing the life cycle and feeding of ancestral vertebrates, pp. 59-68. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Moy-Thomas, J. A. and R. S. Miles. 1971. Paleozoic Fishes, 2nd edition. Chapman and Hall, London. 259 p.

Neidert, A. H., V. Virupannavar, G. W. Hooker and J. A. Langeland. 2001. Lamprey Dlx genes and early vertebrate evolution. Proceedings of the National Academy of Sciences, 98:1665-1670.

Northcutt, R. G. 1985. The brain and sense organs of the earliest vertebrates: reconstruction of a morphotype, pp. 81-112. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Northcutt, R. G. and C. Gans. 1983. The genesis of neural crest and epidermal placodes: a reinterpretation of vertebrate origins. Quarterly Review of Biology, 58:1-28.

Nursall, J. R. 1956. The lateral musculature and the swimming of fish. Proceedings of the Zoological Soceity of London, 126:127-143.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Ruben, J. A. and A. F. Bennett. 1980. Antiquity of vertebrate pattern of activity metabolism and its possible relation to vertebrate origins. Nature, 286:886-888.

Schluter, S. F., R. M. Bernstein, H. Bernstein and J. J. Marchalonis. 1999. “Big Bang” emergence of the combinatorial immune system. Developmental and Comparative Immunology, 23:107-111.

Schultze, H. -P. and R. Cloutier (eds.). 1996. Devonian Fishes and Plants of Miguasha, Quebec, Canada. Verlag Dr. Friedrich Pfeil, Munchen. 374 pl.

Shimeld, S. M. and P. W. H. Holland. 2000. Vertebrate innovations. Proceedings of the National Academy of Sciences, 97:4449-4452.

Shu, D. –G., H. –L. Luo, S. Conway Morris, X. –L. Zhang, S. –X. Hu, L. Chen. J. Han, M. Zhu, Y. Li, and L. –Z. Chen. 1999. Lower Cambrian vertebrates from south China. Nature, 402:42-46.

Smith, M. M. and B. K. Hall. 1990. Development and evolutionary origins of vertebrate skeletogenic and odontogenic tissues. Biological Reviews, 65:277-373.

Stensiö, E. 1968. The cyclostomes with special reference to the diphyletic origin of Petromyzontida and Myxinoidea, pp. 13-71. In T. Ørvig (ed.), Current Problems of Lower Vertebrate Phylogeny. Almqvist and Wiksell, Stockholm.

Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

Zimmer, C. 2000. In search of vertebrate origins: beyond brain and bone. Science, 287: 1576-1579.

 

            ANASPIDA

            Anaspida page on the Tree of Life

 

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

 

PETROMYZONTIDA 

Hyperoartia page on the Tree of Life

Bardack, D. and R. Zangerl. 1968. First fossil lamprey: a record from the Pennsylvanian of Illinois. Nature, 162:1265-1267.

Beamish, R. J. 1985. Freshwater parastic lamprey on Vancouver Island and a theory of the evolution of the freshwater parasitic and nonparasitic life history types, pp. 123-140. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Bodznick, D. and R. G. Northcutt. 1981. Electroreception in lampreys: evidence that the earliest vertebrates were electroreceptive. Science, 212:465-467

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gorbman, A. and A. Tamarin. 1985. Early development of oral, olfactory and adenohypophyseal structures of agnathans and its evolutionary implications, pp. 165-185. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Hardisty, M. W. 1971. The Biology of Lampreys. Academic Press, London. 4 v.

Hardisty, M. W. 1979. Biology of the Cyclostomes. Chapman and Hall, London. 428 p.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Neidert, A. H., V. Virupannavar, G. W. Hooker and J. A. Langeland. 2001. Lamprey Dlx genes and early vertebrate evolution. Proceedings of the National Academy of Sciences, 98:1665-1670.

Northcutt, R. G. 1985. The brain and sense organs of the earliest vertebrates: reconstruction of a morphotype, pp. 81-112. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Nursall, J. R. 1956. The lateral musculature and the swimming of fish. Proceedings of the Zoological Soceity of London, 126:127-143.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Stensiö, E. 1968. The cyclostomes with special reference to the diphyletic origin of Petromyzontida and Myxinoidea, pp. 13-71. In T. Ørvig (ed.), Current Problems of Lower Vertebrate Phylogeny. Almqvist and Wiksell, Stockholm.

Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

Youson, J. H. 1985. Organ development and specialization in lamprey species, pp. 141-164. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

 

OSTEOSTRACI 

Osteostraci page on the Tree of Life

Pituriaspida page on the Tree of Life

Denison, R. H. 1951. Early Devonian Fishes from Utah: Part I. Osteostraci. Fieldiana, 11:263-287.

Denison, R. H. 1951. Evolution and classification of the Osteostraci. Fieldiana, 11:155-196.

Denison, R. H. 1951. The exoskeleton of the early Osteostraci. Fieldiana, 11:197-218.

Denison, R. H. 1968. Middle Devonian fishes from the Lemhi Range of Idaho. Fieldiana, 16:269-288.

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Janvier, P. 1984. The relationships of the Osteostraci and Galeaspida. Journal of Vertebrate Paleontology, 4:344-358.

Moy-Thomas, J. A. and R. S. Miles. 1971. Paleozoic Fishes, 2nd edition. Chapman and Hall, London. 259 p.

Schultze, H. -P. and R. Cloutier (eds.). 1996. Devonian Fishes and Plants of Miguasha, Quebec, Canada. Verlag Dr. Friedrich Pfeil, Munchen. 374 pl.

 

GALEASPIDA 

Galeaspida page on the Tree of Life

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Janvier, P. 1984. The relationships of the Osteostraci and Galeaspida. Journal of Vertebrate Paleontology, 4:344-358.

Moy-Thomas, J. A. and R. S. Miles. 1971. Paleozoic Fishes, 2nd edition. Chapman and Hall, London. 259 p.

Schultze, H. -P. and R. Cloutier (eds.). 1996. Devonian Fishes and Plants of Miguasha, Quebec, Canada. Verlag Dr. Friedrich Pfeil, Munchen. 374 pl.

 

CONODONTA 

Euconodonta page on the Tree of Life

Briggs, D. E. G., E. K. Clarkson, and R. J. Aldridge. 1983. The conodont animal. Lethaia, 16:1-14.

Donoghue, P. C. J., P. L. Forey and R. J. Aldridge. 2000. Conodont affinity and chordate phylogeny. Biological Reviews, 75:191-251.

Sansom, I. J., M. P. Smith, H. A. Armstrong and M. M. Smith. 1992. Presence of the earliest vertebrate hard tissues in conodonts. Science, 256:1308-1311.

Sweet, W. C. and P. C. J. Donoghue. 2001. Conodonts: past, present, future. Journal of Paleontology, 75:1174-1184.

 

GNATHOSTOMATA 

Gnathostomata page on the Tree of Life

Bodznick, D. and R. G. Northcutt. 1981. Electroreception in lampreys: evidence that the earliest vertebrates were electroreceptive. Science, 212:465-467

Cao, Y., P. J. Waddell, N. Okada and M. Hasegawa. 1998. The complete mitochondrial DNA sequence of the shark Mustelus manazo: evaluating rooting contradictions to living bony vertebrates. Molecular Biology and Evolution, 15:1637-1346.

Denison, R. H. 1956. A review of the habitat of the earliest vertebrates. Fieldiana,11:357-457.

Denison, R. H. 1961. Feeding mechanisms of Agnatha and early gnathostomes. American Zooloist, 1:177-181.

Denison, R. H. 1967. Ordovician vertebrates from western United States. Fieldiana, 16:131-192.

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gorbman, A. and A. Tamarin. 1985. Early development of oral, olfactory and adenohypophyseal structures of agnathans and its evolutionary implications, pp. 165-185. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Graham, A. and A. Smith. 2001. Patterning the pharyngeal arches. BioEssays, 23:54-61.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Holland, N. D. and J. Chen. 2001. Origin and early evolution of the vertebrates: new insights from advances in molecular biology, anatomy, and palaeontology. BioEssays, 23:142-151.

Janvier, P. 1984. The relationships of the Osteostraci and Galeaspida. Journal of Vertebrate Paleontology, 4:344-358.

Long, J. A. 1995. The Rise of Fishes: 500 million years of evolution. Johns Hopkins University Press, Baltimore. 223 p.

Maisey, J. G. 1988. Phylogeny of early vertebrate skeletal induction and ossification patterns. Evolutionary Biology, 22:1-36.

Mallatt, J. 1984. Early vertebrate evolution: pharyngeal structure and the origin of gnathostomes. Journal of Zoology, London, 204:169-183.

Mallatt, J. 1985. Reconstructing the life cycle and feeding of ancestral vertebrates, pp. 59-68. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Moy-Thomas, J. A. and R. S. Miles. 1971. Paleozoic Fishes, 2nd edition. Chapman and Hall, London. 259 p.

Northcutt, R. G. 1985. The brain and sense organs of the earliest vertebrates: reconstruction of a morphotype, pp. 81-112. In R. E. Foreman, A. Gorbman, J. M. Dodd and R. Olsson (eds.), Evolutionary Biology of Primitive Fishes. Plenum Press, New York. 463 p.

Northcutt, R. G. and C. Gans. 1983. The genesis of neural crest and epidermal placodes: a reinterpretation of vertebrate origins. Quarterly Review of Biology, 58:1-28.

Nursall, J. R. 1956. The lateral musculature and the swimming of fish. Proceedings of the Zoological Soceity of London, 126:127-143.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Rasmussen, A.-S. and U. Arnason. 1999. Molecular studies suggest that cartilaginous fishes have a terminal position in the piscine tree. Proceedings of the National Academy of Sciences, 96:2177-2182.

Ruben, J. A. and A. F. Bennett. 1980. Antiquity of vertebrate pattern of activity metabolism and its possible relation to vertebrate origins. Nature, 286:886-888.

Schultze, H. -P. and R. Cloutier (eds.). 1996. Devonian Fishes and Plants of Miguasha, Quebec, Canada. Verlag Dr. Friedrich Pfeil, Munchen. 374 pl.

Shimeld, S. M. and P. W. H. Holland. 2000. Vertebrate innovations. Proceedings of the National Academy of Sciences, 97:4449-4452.

Smith, M. M. and B. K. Hall. 1990. Development and evolutionary origins of vertebrate skeletogenic and odontogenic tissues. Biological Reviews, 65:277-373.

Stensiö, E. 1968. The cyclostomes with special reference to the diphyletic origin of Petromyzontida and Myxinoidea, pp. 13-71. In T. Ørvig (ed.), Current Problems of Lower Vertebrate Phylogeny. Almqvist and Wiksell, Stockholm.

Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

Venkatesh, B., M. V. Erdmann and S. Brenner. 2001. Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates. Proceedings of the National Academy of Sciences, 98:11382-11387.

Zimmer, C. 2000. In search of vertebrate origins: beyond brain and bone. Science, 287: 1576-1579.

 

ACANTHODII

Gnathostomata page on the Tree of Life

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Miles, R. S. 1973. Relationships of acanthodians. Zoological Journal of the Linnean Society, 53(Supp.):63-103.

 

PLACODERMI 

Gnathostomata page on the Tree of Life

Denison, R. H. 1958. Early Devonian Fishes from Utah: Part III. Arthrodira. Fieldiana, 11:461-551.

Denison, R. H. 1962. A reconstruction of the shield of the arthrodire Bryantolepis brachycephalis (Bryant). Fieldiana, 14:99-104.

Denison, R. H. 1975. Evolution and classification of placoderm fishes. Brevoria, 432:1-25.

Denison, R. H. 1984. Further consideration of the phylogeny and classification of the order Arthrodira (Pices: Placodermi). Journal of Vertebrate Paleontology, 4:396-412.

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Forey, P. L. and B. G. Gardiner. 1986. Observations on Ctenurella (Ptyctodontida) and the classification of placoderm fishes. Zoological Journal of the Linnean Society, 86:43-74.

Gardiner, B. G. 1984. The relationship of placoderms. Journal of Vertebrate Paleontology, 4:379-395.

Gardiner, B. G. and R. S. Miles. 1994. Eubrachythoracid arthrodires from Gogo, Western Australia. Zoological Journal of the Linnean Society, 112:443-477.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Moy-Thomas, J. A. and R. S. Miles. 1971. Paleozoic Fishes, 2nd edition. Chapman and Hall, London. 259 p.

Schultze, H. -P. and R. Cloutier (eds.). 1996. Devonian Fishes and Plants of Miguasha, Quebec, Canada. Verlag Dr. Friedrich Pfeil, Munchen. 374 pl.

Werdelin, L. and J. A. Long. 1986. Allometry in the placoderm Bothriolepis canadensis and its significance to antiarch evolution. Lethaia, 19:161-169.

 

CHONDRICHTHYES 

Gnathostomata page on the Tree of Life

Aetobatus narinari (upper jaw) on the Digimorph site

Aetobatus narinari (lower jaw) on the Digimorph site

Heterodontus francisci on the Digimorph site

Hydrolagus colliei (head) on the Digimorph site

Hydrolagus colliei (tooth plates) on the Digimorph site

Notorynchus cepedianus on the Digimorph site

Pristis sp. on the Digimorph site

Cao, Y., P. J. Waddell, N. Okada and M. Hasegawa. 1998. The complete mitochondrial DNA sequence of the shark Mustelus manazo: evaluating rooting contradictions to living bony vertebrates. Molecular Biology and Evolution, 15:1637-1346.

Capetta, H. Condrichthyes II - Mesozoic and Cenozoic Elasmobranchii. Handbook of Paleoicthyology, 3B:1-193.

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Gilbert, S. G. 1973. Anatomy of the Dogfish. University of Washington Press, Seattle. 59 p.

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Maisey, J. G. 1989. Hamiltonichthys mapesi, g. and sp. nov. (Chondrichthyes: Elasmobranchii), from the Upper Pennsylvanian of Kansas. American Museum Novitates, 2931:1-42.

Maisey, J. G. Condrichthyan phylogeny, a look at the evidence. 1984. Journal of Vertebrate Paleontology, 4:359-371.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Moss, M. L. Skeletal tissues in sharks. American Zoologist, 17:335-342.

Moss, S. A. 1977. Feeding mechanisms in sharks. American Zoologist, 17:355-364.

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Patterson, C. Interpretation of the toothplates of chimaeroid fishes. Zoological Journal of the Linnean Society, 106:33-61.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Rasmussen, A.-S. and U. Arnason. 1999. Molecular studies suggest that cartilaginous fishes have a terminal position in the piscine tree. Proceedings of the National Academy of Sciences, 96:2177-2182.

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Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

Thomson, K. S. 1976. On the heterocercal tail of sharks. Paleobiology, 2:19-38.

Thomson, K. S. and D. E. Simaner. 1977. Body form and locomotion in sharks. American Zoologist, 17:343-354.

 

 ACTINOPTERYGII

Actinopterygii page on the Tree of Life

Teleostei page on the Tree of Life

Lepisosteus osseus on the Digimorph site

Prietella lundbergi (head) on the Digimorph site

Prietella lundbergi (whole body)on the Digimorph site

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Alexander, R. M. 1967. The functions and mechanisms of the protrusible upper jaws of some acanthopterygian fish. Journal of Zoology, London, 151:43-64.

Adriaens, D., P. Aerts, and W. Verraes. 2001. Ontogenetic shift in mouth opening mechanisms in a catfish (Clariidae, Siluriformes): a response to increasing functional demands. Journal of Morphology, 247:197-216.

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Bemis, W. E. and L. Grande. 1992. Early development of the actinopterygian head. I. external development and staging of the paddlefish Polyodon spathula. Journal of Morphology, 213:47-83.

Boreske, J. R. 1974. A review of the North American fossil amiid fishes. Bulletin of the Museum of Comparative Zoology, 146:1-87.

Bornbusch, A. H. 1995. Phylogenetic relationships within the Eurasian catfish family Siluridae (Pices: Siluriformes), with comments on generic validities and biogeography. Zoological Journal of the Linnean Society, 115:1-46.

Britz, R. 1994. Ontogenetic features of Luciocephalus (Perciformes, Anabantoidei) with a revised hypothesis of anabantoid intrarelationships. Zoological Journal of the Linnean Society, 112:491-508.

Cavin, L. and P. L. Forey. 2001. Osteology and systematic affinities of Palaeonotopterus greenwoodi Forey 1997 (Teleostei: Osteoglossomorpha). Zoological Journal of the Linnean Society, 133:25-52.

Coates, M. I. 1998. Actinopterygians from the Namurian of Bearsden, Scotland, with comments on early actinopterygian neurocrania. Zoological Journal of the Linnean Society, 122:27-59.

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Diogo, R., C. Oliveira and M. Chardon. 2001. On the osteology and myology of catfish pectoral girdle, with a reflection on catfish (Teleostei: Siluriformes) plesiomorphies. Journal of Morphology, 249:100-125.

Dyer, B. S. and B. Chernoff. 1996. Phylogenetic relationships among atheriniform fishes (Teleostei: Atherinomorpha). Zoological Journal of the Linnean Society, 117:1-69.

Eastman, J. T. and M. J. Lannoo. 1998. Morphology of the brain and sense organs in the snailfish Paraliparis devriesi: neural convergence and sensory compensation on the Antarctic shelf. Journal of Morphology, 237:213-236.

Ferraris, C. J., Jr. and R. P. Vari. 1999. The South American catfish genus Auchenipterus Valenciennes, 1840 (Ostariophysi: Siluriformes: Auchenipteridae): monophyly and relationships, with a revisionary study. Zoological Journal of the Linnean Society, 126:387-450.

Ferreira, L. C. G., R. J. beamish and J. H. Youson. 1999. Macroscopic structure of the fin rays and their annuli in pectoral and pevlic fins of chinook salmon, Oncorhynchus tshawytscha. Journal of Morphology, 239:297-320.

Ferry-Graham, L. A. and G. V. Lauder. 2001. Aquatic prey capture in ray-finned fishes: a century of progress and new directions. Journal of Morphology, 248:99-119.

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Webb, P. W. 1982. Locomotor patterns in the evolution of actinopterygian fishes. American Zoologist, 22:329-342.

Wiley, E. O. 1976. The phylogeny and biogeography of fossil and Recent gars (Actinopterygii: Lepisosteidae). University of Kansas Museum of Natural History, Miscellaneous Publications, 64:1-111.

Wilson, M. V. H. and Li G.-Q. 1999. Osteology and systematic position of the Eocene salmonid Eosalmo driftwoodensis Wilson from western North America. Zoological Journal of the Linnean Society, 125:279-311.

Yamamoto, Y. and W. R. Jeffery. 2000. Central role for the lens in cave fish eye degeneration. Science, 289:631-633.

 

SARCOPTERYGII

Sarcopterygii page on the Tree of Life

Ahlberg, P. E. 1999. Something fishy in the family tree. Nature, 397:564-565.

Cloutier, R. and P. E. Ahlberg. 1996. Morphology, characters, and the interrelationships of basal sarcopterygians, pp. 445-479. In Interrelationships of Fishes, M. L. J. Stiassny, L. R. Parenti and G. D. Johnson (eds.). Academic Press, San Diego.

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Hyodo, S., S. Ishii and J. M. P. Joss. 1997. Austalian lungfish neurohypophysial hormon genes encode vasotocin and [Phe2]mesotocin precursors homologous to tetrapod-type precursors. Proceedings of the National Academy of Sciences, 94:13339-13344.

Johanson, Z. and P. E. Ahlberg. 1998. A complete primitive rhizodont from Ausatralia. Nature, 394:569-573.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Roush, W. 1997. "Living fossil" fish is dethroned. Science, 277:1436.

Rosen, D. E., P. L. Forey, B. G. Gardiner and C. Patterson. 1981. Lungfishes, tetrapods, paleontology, and plesiomorphy. Bulletin of the American Museum of Natural History, 167:163-275.

Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

Zarodaya, R. and A. Meyer. 1996. Evolutionary relationships of the Coelocanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene. Proceedings of the National Academy of Sciences, 93:5449-5454.

Zhu M., Yu X. and P. Janvier. 1999. A primitive fossil fish sheds light on the origin of bony fishes. Nature, 397:607-610.

Zhu M., Yu X. and P. E. Ahlberg. 2001. A primitive sarcopterygian fish with an eyestalk. Nature, 410:81-84.

 

DIPNOI 

Sarcopterygii page on the Tree of Life

Denison, R. H. 1968. Early Devonian lungfishes from Wyoming, Utah, and Idaho. Fieldiana, 17:351-413.

Denison, R. H. 1974. The structure and evolution of teeth in lungfishes. Fieldiana, 33:31-58.

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Hyodo, S., S. Ishii and J. M. P. Joss. 1997. Austalian lungfish neurohypophysial hormon genes encode vasotocin and [Phe2]mesotocin precursors homologous to tetrapod-type precursors. Proceedings of the National Academy of Sciences, 94:13339-13344.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Roush, W. 1997. "Living fossil" fish is dethroned. Science, 277:1436.

Rosen, D. E., P. L. Forey, B. G. Gardiner and C. Patterson. 1981. Lungfishes, tetrapods, paleontology, and plesiomorphy. Bulletin of the American Museum of Natural History, 167:163-275.

Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

Zarodaya, R. and A. Meyer. 1996. Evolutionary relationships of the Coelocanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene. Proceedings of the National Academy of Sciences, 93:5449-5454.

 

ACTINISTIA

 

Sarcopterygii page on the Tree of Lifef

Churcher, C. S., W. E. Bemis and A. M. Simons. 1997. Coelocanth catches. Science, 278:369-373.

Cloutier, R. 1991. Patterns, trends, and rates of evolution within the Actinistia. Environmental Biology of Fishes, 32:23-58.

Cloutier, R. and P. L. Forey. 1991. Diversity of extinct and living actinistian fishes (Sarcopterygii). Environmental Biology of Fishes, 32:59-74.

Erdmann, M. V., R. L. Caldwell and M. K. Moosa. 1998. Indonesian "king of the sea" discovered. Nature, 395:335

Forey, P. L. 1984. Yet more reflections on agnathan-gnathostome relationships. Journal of Vertebrate Paleontology, 4:330-343.

Forey, P. and P. Janvier. 1993. Agnathans and the origin of jawed vertebrates. Nature, 361:129-134.

Fricke, H. 1988. Coelocanths: the fish that time forgot. National Geographic, 173:824-838.

Gregory, W. K. and H. C. Raven. 1941. Studies on the origin and early evolution of paired fins and limbs: Part I. paired fins and girdles in ostracoderms, placoderms, and other primitive fishes. Annals of the New York Academy of Sciences, 42:273-360.

Holden, C. 1999. Dispute over a legendary fish. Science, 284:22-23.

Holder, M. T., M. V. Erdmann, T. P. Wilcox, R. L. Caldwell and D. M. Hillis. 1999. Two species of living coelocanths? Proceedings of the National Academy of Sciences, 96:12616-12620.

Migdalski, E. C. and G. S. Fichter. 1976. The Fresh and Salt Water Fishes of the World. Alfred A. Knopf, New York. 316 p.

Nieuwenhuys, R., J. P. M. Kremers and C. van Huijzen. 1977. The brain of the crossopterygian fish Latimeria chalumnae: a survey of its gross structure. Anatomy and Embryology, 151:157-169.

Paxton, J. R. and W. N. Eschmeyer (eds.). 1998. Encyclopedia of Fishes, 2nd ed. Academic Press, San Diego. 240 p.

Roush, W. 1997. "Living fossil" fish is dethroned. Science, 277:1436.

Rosen, D. E., P. L. Forey, B. G. Gardiner and C. Patterson. 1981. Lungfishes, tetrapods, paleontology, and plesiomorphy. Bulletin of the American Museum of Natural History, 167:163-275.

Stiassny, M. L. J., L. R. Parenti and G. D. Johnson (eds.). 1996. Interrelationships of Fishes. Academic Press, San Diego. 496 p.

Westoll, T. S. 1939. On Spermatodus pustulosus Cope, a coelacanth from the "Permian" of Texas. American Museum Novitates, 1017:1-23.

Yokoyama, S., Zhang H., F. B. Radlwimmer and N. S. Blow. 1999. Adaptive evolution of color vision of the Comoran coelocanth (Latimeria chalumnae). Proceedings of the National Academy of Sciences, 96:6279-6284.

Zarodaya, R. and A. Meyer. 1996. Evolutionary relationships of the Coelocanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene. Proceedings of the National Academy of Sciences, 93:5449-5454.

 

PANTETRAPODA

 

Sarcopterygii page on the Tree of Life

"Terrestrial Vertebrates" on the Tree of Life

 

Ahlberg, P. E. and Z. Johanson. 1998. Osteolepiforms and the ancestry of tetrapods. Nature, 395:792-794.

Andrews, S. M. 1972. The shoulder girdle of "Eogyrinus," pp. 35-48. In Studies in Vertebrate Evolution, K. A. Joysey and T. S. Kemp (eds.). Oliver and Boyd, Edinburgh.

Beaumont, E. H. and T. R. Smithoson. 1998. The cranial morphology and relationships of the aberrant Carboniferous amphibian Spathicephalus mirus Watson. Zoological Journal of the Linnean Society, 122:187-209.

Bossuyt, F. and M. C. Milinkovitch. 2001. Amphibians as indicators of early Tertiary "out of India" dispersal of vertebrates. Science, 292:93-95.

Carroll, R. L. 1998. Cranial anatomy of ophiderpetontid aïstopods: Palaeozoic limbless amphibians. Zoological Journal of the Linnean Society, 122:143-166.

Carroll, R. L. 2001. The origin and early radiation of terrestrial vertebrates. Journal of Paleontology, 75:1202-1213.

Clack, J. A. 1998. A new Early Carboniferous tetrapod with a mélange of crown-group characters. Nature, 394:66-69.

Clack, J. A. 2000. The origin of tetrapods, pp. 979-1029. In Amphibian Biology, Volume 4, Paleontology: the Evolutionary History of Amphibians, H. Heatwole and R. L. Carroll (eds.). Surrey, Beatty and Sons, Chipping Norton.

Cloutier, R. and P. E. Ahlberg. 1996. Morphology, characters, and the interrelationships of basal sarcopterygians, pp. 445-479. In Interrelationships of Fishes, M. L. J. Stiassny, L. R. Parenti and G. D. Johnson (eds.). Academic Press, San Diego.

Damiani, R. J. 2001. A systematic revision and phylogenetic analysis of Triassic mastodonsauroids (Temnospondyli: Stereospondyli). Zoological Journal of the LInnean Society, 133:379-482.

Djorović, A. and M. L. Kalezić. 2000. Paedogenesis in european newts (Triturus: Salamandridae): cranial morphology during ontogeny. Journal of Morphology, 243:127-139.

Fabrezi, M. 2001. A survey of prepollex and prehallux variation in anuran limbs. Zoological Journal of the Linnean Society, 131:227-248.

Fabrezi, M. and M. Brag. 2001. Patterns of carpal development among anuran amphibians. Journal of Morphology, 249:210-220.

Gao K.-G. and N. H. Shubin. 2001. Late Jurassic salamanders from northern China. Nature, 410:574-577.

Gardner, J. D. 2001. Monophyly and affinities of albanerpetontid amphibians (Temnospondyli: Lissamphibia). Zoological Journal of the Linnean Society, 131:309-352.

Graybeal, A. 1997. Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation. Zoological Journal of the Linnean Society, 119:297-338.

Gauthier, J., D. Cannatella, K. de Queiroz, A. G. Kluge and T. Rowe. 1989. Tetrapod phylogeny, pp. 337-353. IN The Hierarchy of Life, B. Fernholm, K. Bremer and H. Jörnvall (eds.). Elsevier, Amsterdam.

Greiner, H. 1977. Crossopterygian fauna from the Albert Formation, New Brunswick, Canada, and its stratigraphic-paleoecologic siginificance. Journal of Paleontology, 51:44-56.

Hall, J. A. and J. H. Larsen. 1998. Postembryonic ontogeny of the spadefoot toad, Scaphiopus intermontanus (Anura: Pelobatidae): skeletal morphology. Journal of Morphology, 238:179-244.

Hillis, D. M. and S. K. Davis. 1987. Evolution of the 28S ribosomal RNA gene in anurans: regions of variability and their phylogenetic implications. Molecular Biology and Evolution, 4:117-125.

Johanson, Z. and P. E. Ahlberg. 1998. A complete primitive rhizodont from Ausatralia. Nature, 394:569-573.

Katchburian, E., M. M. Antoniazzi, C. Jared, F. P. Faria, H. Souza-Santoa and E. Freymüller. 2001. Mineralized dermal layer of the Brazilian tree-frog Corythomantis greeningi. Journal of Morphology, 248:56-63.

Kathe, W. 1999. Comparative morphology and functional interpretation of the sutures in the dermal skull roof of temnospondyl amphibians. Zoological Journal of the Linnean Society, 126:1-39.

Klembara, J. 1993. Variation in Discosauriscus austriacus (Makowsky, 1876) from the Lower Permian of the Boskovice Furrow (Czech Republic). Zoological Journal of the Linnean Society, 108:247-270.

Lebedev, O. A. 1997. Fins made for walking. Nature, 390:21-22.

Lombard, R. E. and S. S. Sumida. 1992. Recent progress in understanding early tetrapods. American Zoologist, 32:609-622.

Milner, A. C. 1980. A review of the Nectridea. Systematics Association Special Volume, 15:377-405.

Milner, A. C. and W. Lindsay. 1998. Postcranial remains of Baphetes and their bearing on the relationships of the Baphetidae (=Loxommatidae). Zoological Journal of the Linnean Society, 122:211-235.

Milner, A. R. and S. E. K. Sequeira. 1998. A cochleosaurid temnospondyl amphibian from the Middle Pennsylvanian of Linton, Ohio, U.S.A. Zoological Journal of the Linnean Society, 122:261-290.

Panchen, A. L. 1972. The interrelationships of the earliest tetrapods, pp. 65-87. In Studies in Vertebrate Evolution, K. A. Joysey and T. S. Kemp (eds.). Oliver and Boyd, Edinburgh.

Panchen, A. L. and T. R. Smithson. 1988. The relationships of the earliest tetrapods. Systematics Association Special Volume, 35A:1-32.

Rosen, D. E., P. L. Forey, B. G. Gardiner and C. Patterson. 1981. Lungfishes, tetrapods, paleontology, and plesiomorphy. Bulletin of the American Museum of Natural History, 167:163-275.

Paton, R. L., T. R. Smithson and J. A. Clack. 1999. An amniote-like skeleton from the Early Carboniferous of Scotland. Nature, 398:508-513.

Sequeira, S. E. K. 1998. The cranial morphology and taxonomy of the saurerpetontid Isodectes obtusus comb. nov. (Amphibia: Temmonspondyli) from the Lower Permian of Texas. Zoological Journal of the Linnean Society, 122:237-259.

Skulan, J. 2000. Has the importance of the amniote egg been overstated? Zoological Journal of the Linnean Society, 130:235-261.

Smithson, T. R. 1982. The cranial morphology of Greererpeton burkemorani Romer (Amphibia: Temnospondyli). Zoological Journal of the Linnean Society, 76:29-90.

Smithson, T. R. 1985. The morphology and relationships of the Carboniferous amphibian Eoherpeton watsoni Panchen. Zoological Journal of the Linnean Society, 85:317-410.

Smithson, T. R. and K. S. Thomson. 1982. The hyomandibular of Eusthenopteron foordi Whiteaves (Pices: Crossopterygii) and the ealy evolution of the tetrapod stapes. Zoological Journal of the Linnean Society, 74:93-103.

Steyer, J.-S., 2000. Ontogeny and phylogeny in temnospondyls: a new method of analysis. Zoological Journal of the Linnean Society, 130:449-467.

Trueb, L. and R. Cloutier, 1991. Toward an understanding of the amphibians: two centuries of systematic history, pp. 175-193. In Origins of the Higher Groups of Tetrapods: Controversy and Consensus. Cornell University Press, Ithaca.

Warren, A. 1998. Laileria uncovered: a redescription of Laileria gracilis Kitching (1957), a temonspondyl from the Cynognathus Zone of South Africa. Zoological Journal of the Linnean Society, 122:167-185.

Yates, A. M. and A. A. Warren. 2000. The phylogeny of the "higher" temnospondyls (Vertebrata: Choanata) and its implications for the monophyly and origins of the Stereospondyli. Zoological Journal of the Linnean Society, 128:77-121.

Zarodaya, R. and A. Meyer. 1996. Evolutionary relationships of the Coelocanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene. Proceedings of the National Academy of Sciences, 93:5449-5454.

Zidek, J. and D. Baird. 1978. Cercariomorphus Cope, 1885, identified as the Aïstopod amphibian Ophidherpteon. Journal of Paleontology, 52:561-564.

 

 

AMPHIBIA

 

"Living Amphibians" page on the Tree of Life

 

Amphibians on the Digimorph site

 

Babcock, S. K. and J. L. Blais. 2001. Caudal vertebral development and morphology in three salamanders with complex life cycles (Ambystoma jeffersonianum, Hemidactylium scutatum, and Desmognathus ocoee). Journal of Morphology, 247:142-159.

Blanco, M. J. and B. Sanchiz. 2000. Evolutionary mechanisms of rib loss in Anurans: a comparative developmental approach. Journal of Morphology, 244:57-67.

Bossuyt, F. and M. C. Milinkovitch. 2001. Amphibians as indicators of early Tertiary "out of India" dispersal of vertebrates. Science, 292:93-95.

Callery, E. M., H. Fang, and R. P. Elinson. 2001. Frogs without polliwogs: evolution of anuran direct development. BioEssays 23:233-241.

Carroll, R. L. 1988. The conquest of land and the radiation of amphibians, pp. 156-191. In Vertebrate Paleontology and Evolution. Freeman, New York.

Carroll, R. L. 2001. The origin and early radiation of terrestrial vertebrates. Journal of Paleontology, 75:1202-1213.

Deban, S. M.,  D. B. Wake and G. Roth. 1997. Salamander with a ballistic tongue. Nature, 389:27-28

Gauthier, J., D. Cannatella, K. de Queiroz, A. G. Kluge and T. Rowe. 1989. Tetrapod phylogeny, pp. 337-353. IN The Hierarchy of Life, B. Fernholm, K. Bremer and H. Jörnvall (eds.). Elsevier, Amsterdam.

Mendelson, J. R., III, H. R. Da Silva and A. M. Maglia. 2000. Phylogenetic relationships among marsupial frog genera (Anura: Hylidae: Hemiphractinae) based on evidence from morphology and natural history. Zoological Journal of the Linnean Society, 128:125-148.

Milner, A. R. 1988. The relationships and origin of living amphibians. Systematics Association Special Volume, 35A:59-102.

Púgener, L. A. and A. M. Maglia. 1997. Osteology and skeletal development of Discoglossus sardus (Anura: Discoglossidae). Journal of Morphology, 233:267-286.

Reiss, J. O. 1998. Anuran postnasal wall homology: an experimental extirpation study. Journal of Morphology 238:343-353.

Ryan, T. J. and R. D. Semlitsch. 1998. Intraspecific heterochrony and life history evolution: decoupling somatic and sexual development in a facultatively paedomorphic salamander. Proceedings of the National Academy of Sciences, 95:5643-5648.

Sheil, C. A. 1999. Osteology and skeletal development of Pyxicephalus adspersus (Anura: Ranidae: Raninae). Journal of Morphology, 240:49-75.

Summers, A. P. and J. C. O'Reilly. 1997. A comparative study of locomotion in the caecilians Dermophis mexicanus and Typhlonectes natans (Amphibia: Gymnophiona). Zoological Journal of the Linnean Society, 121:65-76.

Trueb, L. and R. Cloutier, 1991. Toward an understanding of the amphibians: two centuries of systematic history, pp. 175-193. In Origins of the Higher Groups of Tetrapods: Controversy and Consensus. Cornell University Press, Ithaca.

Trueb, L. and R. Cloutier, 1991. A phylogenetic investigation of the intter- and intrarelationships of the Lissamphibia (Amphibia: temnospondyli), pp. 223-313. In Origins of the Higher Groups of Tetrapods: Controversy and Consensus. Cornell University Press, Ithaca.

Trueb, L., L. A. Púgener and A. M. Maglia. 2000. Ontogeny of the bizarra: an osteological description of Pipa pipa (Anura: Pipidae), with an account of skeletal development in the species. Journal of Morphology, 243:75-104.

Vaglia, J. L., S. K. Babcock and R. N. Harris. 1997. Tail development and regeneration throughout the life cycle of the fourt-toed salamander Hemidactylium scutatum. Journal of Morphology, 233:15-29.

Voss, S. R. and H. B. Shaffer. 1997. Adaptive evolution via a major gene effect: paedomorphosis in the Mexican axolotl. Proceedings of the National Academy of Sciences, 94:14185-14189.

Wake, M. H. 1998. Cartilage in the Cloaca: phallodeal spicules in Caeciians (Amphibia: Gymnophiona). Journal of Morphology, 237:177-186.

Wild, E. R. Description of the adult skeleton and developmental osteology of the hyperossified horned frog, Ceratophrys cornuta (Anura: Leptodactylidae). Journal of Morphology, 232:169-206.

Wilkinson, M. 1996. The heart and aortic arches of rhinatrematid caecilians (Amphibia: Gymnophiona). Zoological Journal of the Linnean Society, 118:135-150.

Wilkinson, M. and R. A. Nussbaum. 1999. Evolutionary relationships of the lungless caecilian Atretochoana eiselti (Amphibia: Gymnophiona: Tyhphlonectidae). Zoological Journal of the Linnean Society, 126:191-223.

 

PANAMNIOTA

 

"Terrestrial Vertebrates" on the Tree of Life

Amniota page on the Tree of Life

Burt, D. W., C. Bruley, I. C. Dunn, C. T. Jones, A. Ramage, A. S. Law, D. R. Morrice, I. R. Paton, J. Smith, D. Windsor, A. Sazanov, R. Fries and D. Waddington. 1999. The dynamics of chromosome evolution in birds and mammals. Nature, 402:411-413.

Carroll, R. L. 2001. The origin and early radiation of terrestrial vertebrates. Journal of Paleontology, 75:1202-1213.

Gauthier, J. A., A. G. Kluge and T. Rowe. 1988. The early evolution of the Amniota. Systematics Association Special Volume, 35A:103-155.

Gauthier, J. A., A. G. Kluge and T. Rowe. 1988. Amniote phylogeny and the importance of fossils. Cladistics, 4:105-209.

Gauthier, J., D. Cannatella, K. de Queiroz, A. G. Kluge and T. Rowe. 1989. Tetrapod phylogeny, pp. 337-353. IN The Hierarchy of Life, B. Fernholm, K. Bremer and H. Jörnvall (eds.). Elsevier, Amsterdam.

Heaton, M. J. 1980. The Cotylosauria: a reconsideration of a group of archaic tetrapods. Systematics Association Special Volume, 15: 497-551.

Laurin, M. and R. Reisz. 1995. A reevaluation of early amniote phylogeny. Zoological Journal of the Linnean Society, 113:165-223.

Panchen, A. L. 1972. The interrelationships of the earliest tetrapods, pp. 65-87. In Studies in Vertebrate Evolution, K. A. Joysey and T. S. Kemp (eds.). Oliver and Boyd, Edinburgh.

Panchen, A. L. 1980. The origin and relationships of the anthracosaur Amphibia from the late Paleozoic. Systematics Association Special Volume, 15: 319-350.

Paton, R. L., T. R. Smithson and J. A. Clack. 1999. An amniote-like skeleton from the Early Carboniferous of Scotland. Nature, 398:508-513.

Skulan, J. 2000. Has the importance of the amniote egg been overstated? Zoological Journal of the Linnean Society, 130:235-261.

Smithson, T. R. 1986. A new anthracosaur amphibian from the Carboniferous of Scotland. Palaeontology, 29:603-628.

Trueb, L. and R. Cloutier, 1991. Toward an understanding of the amphibians: two centuries of systematic history, pp. 175-193. In Origins of the Higher Groups of Tetrapods: Controversy and Consensus. Cornell University Press, Ithaca.

Zardoya, R. and A. Meyer. 2001. On the origin of and phylogenetic relationships among living amphibians. Proceedings of the National Academy of Sciences, 98:7380-7383

 

 

SYNAPSIDA

 

Synapsida page on the Tree of Life

 

Synapsida on the Digimorph site

 

Burt, D. W., C. Bruley, I. C. Dunn, C. T. Jones, A. Ramage, A. S. Law, D. R. Morrice, I. R. Paton, J. Smith, D. Windsor, A. Sazanov, R. Fries and D. Waddington. 1999. The dynamics of chromosome evolution in birds and mammals. Nature, 402:411-413.

Gauthier, J. A., A. G. Kluge and T. Rowe. 1988. The early evolution of the Amniota. Systematics Association Special Volume, 35A:103-155.

Gauthier, J. A., A. G. Kluge and T. Rowe. 1988. Amniote phylogeny and the importance of fossils. Cladistics, 4:105-209.

Gauthier, J., D. Cannatella, K. de Queiroz, A. G. Kluge and T. Rowe. 1989. Tetrapod phylogeny, pp. 337-353. IN The Hierarchy of Life, B. Fernholm, K. Bremer and H. Jörnvall (eds.). Elsevier, Amsterdam.

Panchen, A. L. 1972. The interrelationships of the earliest tetrapods, pp. 65-87. In Studies in Vertebrate Evolution, K. A. Joysey and T. S. Kemp (eds.). Oliver and Boyd, Edinburgh.

 

 

SAUROPSIDA

 

Amniota page on the Tree of Life

 

Burt, D. W., C. Bruley, I. C. Dunn, C. T. Jones, A. Ramage, A. S. Law, D. R. Morrice, I. R. Paton, J. Smith, D. Windsor, A. Sazanov, R. Fries and D. Waddington. 1999. The dynamics of chromosome evolution in birds and mammals. Nature, 402:411-413.

Gauthier, J. A., A. G. Kluge and T. Rowe. 1988. The early evolution of the Amniota. Systematics Association Special Volume, 35A:103-155.

Gauthier, J. A., A. G. Kluge and T. Rowe. 1988. Amniote phylogeny and the importance of fossils. Cladistics, 4:105-209.

Gauthier, J., D. Cannatella, K. de Queiroz, A. G. Kluge and T. Rowe. 1989. Tetrapod phylogeny, pp. 337-353. IN The Hierarchy of Life, B. Fernholm, K. Bremer and H. Jörnvall (eds.). Elsevier, Amsterdam.

Laurin, M. and R. Reisz. 1995. A reevaluation of early amniote phylogeny. Zoological Journal of the Linnean Society, 113:165-223.

Panchen, A. L. 1972. The interrelationships of the earliest tetrapods, pp. 65-87. In Studies in Vertebrate Evolution, K. A. Joysey and T. S. Kemp (eds.). Oliver and Boyd, Edinburgh.

Zardoya, R. and A. Meyer. 2001. On the origin of and phylogenetic relationships among living amphibians. Proceedings of the National Academy of Sciences, 98:7380-7383

 

TESTUDINES

 

Testudines page on the Tree of Life

 

Testudines on the Digimorph site

 

Zardoya, R. and A. Meyer. 2001. On the origin of and phylogenetic relationships among living amphibians. Proceedings of the National Academy of Sciences, 98:7380-7383

 

LEPIDOSAUROMORPHA

 

Lepidosauromorpha page on the Tree of Life

 

Lepidosauromorpha on the Digimorph site

 

ARCHOSAUROMORPHA

Burt, D. W., C. Bruley, I. C. Dunn, C. T. Jones, A. Ramage, A. S. Law, D. R. Morrice, I. R. Paton, J. Smith, D. Windsor, A. Sazanov, R. Fries and D. Waddington. 1999. The dynamics of chromosome evolution in birds and mammals. Nature, 402:411-413.

Archosauromorpha page on the Tree of Life

Pseudosuchia on the Digimorph site

Dinosauria (- Aves) on the Digimorph site

Aves on the Digimorph site


 

TEETH

 

            A page with some references on dental evolution.

 

Moss, M. L. 1964. The phylogeny of mineralized tissues. International Review of General and Experimental Zoology, 1:297-331.

Peyer, B. 1968. Comparative Odontology. University of Chicago Press, Chicago. 347 p.

Smith, M. M. and B. K. Hall. 1990. Development and evolutionary origins of vertebrate skeletogenic and odontogenic tissues. Biological Reviews, 65:277-373.

 

 

JERI’S BIOMINERALIZATION REFERENCES

 

Donoghue, P. C. J. and A. J. Aldridge. 2001. Origin of a mineralized skeleton, pp. 85-105. In P. E. Ahlberg (ed.), Major Events in Early Vertebrate Evolution. Taylor and Francis, London.

Lambert, G., C. C. Lambert and H. A. Lowenstam. 1991. Protochordate biomineralization, pp. 461-469. In J. A. Carter (ed.), Skeletal Biomineralization: Patterns, Processes and Evolutionary Trends, Vol. I. Van Nostrand Reinhold, New York.

Lowenstam, H. A. and L. Margulis. 1980. Evolutionary prerequisites for early Phanerozoic calcareous skeletons. Biosystems, 12:27-41.

Skinner H. C. W. 2000. In praise of phosphates, or why vertebrates chose apatite to mineralize their skeletal elements. International Geology Review, 42:232-240.

Smith M. P., I. J. Sansom and K. D. Cochrane. 2001. The Cambrian origin of vertebrates, pp. 67-84. In P. E. Ahlberg (ed.), Major Events in Early Vertebrate Evolution. Taylor and Francis, London.

 

COMPLETENESS, STRATIGRAPHY AND THE ROLE OF FOSSILS

 

Allison, P. A. and D. E. G. Briggs. 1993. Exceptional fossil record: distribution of soft-tissue preservation through the Phanerozoic. Geology, 21:527-530.

Benton, M. J. 1994. Palaeontological data, and identifying mass extinctions. Trends in Ecology and Evolution, 9:181-185.

Benton, M. J. 1995. Testing the time axis of phylogenies. Philosophical Transactions of the Royal Society of London, Series B, 348:5-10.

Benton, M. J. 1999. Early origins of modern birds and mammals: molecules vs. morphology. BioEssays, 21:1043-1051.

Benton, M. J. 1999. Reply to Eastel. BioEssays, 21:1059.

Benton, M. J. and G. W. Storrs. 1994. Testing the quality of the fossil record: paleontological knowledge is improving. Geology, 22:111-114.

Benton, M. J. and M. J. Simms. 1995. Testing the marine and continental fossil records. Geology, 23:601-604.

Benton, M. J. and R. Hitchin. 1996. Testing the quality of the fossil record by groups and by major habitats. Historical Biology, 12:111-157.

Benton, M. J. and R. Hitchin. 1997. Congruence between phylogenetic and stratigraphic data on the history of life. Proceedings of the Royal Society of London, Series B, 264:885-890.

Benton, M. J., R. Hitchin and M. A. Willis. 1999. Assessing congruence between cladistic and stratigraphic data. Systematic Biology, 48:581-596.

Donaghue, M. J. J. A. Doyle, J. Gauthier, A. G. Kluge, and T. Rowe. 1989. The importance of fossils in phylogeny reconstruction. Annual Review of Ecology and Systematics, 20:431-460.

Doyle, J. A. and M. J. Donoghue. Phylogenies and angiosperm diversification. Paleobiology, 19:141-167

Eastel, S. 1999. Molecular evidence for the early divergence of placental mammals. BioEssays, 21:1052-1058.

Eastel, S. 1999. Reply to Benton. BioEssays, 21:1060.

Gauthier, J. A., A. G. Kluge and T. Rowe. 1988. Amniote phylogeny and the importance of fossils. Cladistics, 4:105-209.

Maxwell, W. D. and M. J. Benton. 1990. Historical tests of the absolute completeness of the fossil record of tetrapods. Paleobiology, 16: 322-335.

Norell, M. A. 1992. Taxic origin and temporal diversity: the effect of phylogeny, pp. 89-118. In M. J. Novacek and Q. D. Wheeler (eds.), Extinction and Phylogeny. Columbia University Press, New York.

Norell, M. A. and M. J. Novacek. 1992. Congruence between superpositional and phylogenetic patterns: comparing cladistic patterns with fossil records. Cladistics, 8:319-337.

Norell, M. A. and M. J. Novacek. 1992. The fossil record and evolution: comparing cladistic and paleontologic evidence foragnathans a vertbrate history. Science, 255:1690-1693.

Patterson, C. Significance of fossils in determining evolutionary relationships. Annual Review of Ecology and Systematics, 12: 195-223

Wagner, P. J. 2000. The quality of the fossil record and the accuracy of phylogenetic inferences about sampling and diversity. Systematic Biology, 49:65-86.

 

 

PHYLOGENETIC RECONSTRUCTION

The Molecular Phylogenetics and Evolution issue on Molecules and Morphology in Systematics

The Systematic Biology issue on interordinal relationships of placental mammals

The Systematic Biology issue on taxon sampling issues

 

PHYLOGENETIC NOMENCLATURE

 

Cantino, P. D., H. N. Bryant K. De Queiroz, M. J. Donoghue, T. Eriksson, D. M. Hillis, and M. S. Y. Lee. 1999. Species names in phylogenetic nomenclature. Systematic Biology, 48(4):790-807.

Cantino, P. D. and K. De Queiroz. 2000. Phylocode: a phylogenetic code of biological nomenclature. http://www.ohiou.edu/phylocode/index.html (12 May, 2000).

De Queiroz, K. and J. Gauthier. 1990. Phylogeny as the central principle in taxonomy: phylogenetic definitions of taxon names. Systematic Zoology, 39(4):307-322.

De Queiroz, K. and J. Gauthier. 1992. Phylogenetic Taxonomy. Annual Review of Ecology and Systematics, 23:449-480.

De Queiroz, K. and J. Gauthier. 1994. Toward a phylogenetic system of biological nomenclature. Tree, 9(1):27-31.

 

 

DEVELOPMENT

 

            The Systematic Biology issue on evolution of developmental patterns

 

Clark, R. B. Swimming, pp. 165-204. In Dynamics in Metazoan Evolution. Clarendon Press, Oxford.

Force, A., A. Amores and J. H. Postlethwait. 2002. Hox Cluster Organization in the Jawless Vertebrate Petromyzon marinus. Journal of Experimental Zoology (Molecular and Developmental Evolution), 294:30-46.

Hall, B. K. 1992. Vertebrate development: an overview, pp. 93-123. In Evolutionary Developmental Biology. Chapman and Hall, London.

Jacobson A. and S. Meier. 1986. Somitomeres: the primordial body segments, pp. 1-16. In R. Bellairs, D. A. Ede and J. W. Lash (eds.), Somites in developing Embryos. Plenum Press, New York.

Jacobson, A. G. 1988. Somitomeres: mesodermal segments of vertebrate embryos. Development, 104(supp.):209-220.

Jacobson, A. G., and S. Meier. 1984. Morphogenesis of the head of a newt: mesodermal segments, neuromeres, and distribution of neural crest. Developmental Biology, 106:181-193.

Jollie, M. 1984. The vertebrate head-segmented or a single morphogenetic structure? Journal of Vertebrate Paleontology, 4:320-329.

Langille, R. M. and B. K. Hall. 1989. Developmental processes, developmental sequences, and early vertebrate phylogeny. Biological Reviews, 64:73-91.

Maisey, J. G. 1988. Phylogeny of early vertebrate skeletal induction and ossification patterns. Evolutionary Biology, 22:1-36.

Manzanares, M., H., H. Wada, N. Itasaki, P. A. Trainor, R. Krumlauf and P. W. H. Holland. 2000. Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head. Nature, 408:854-857.

Martindale, M. Q., S. Meier, and A.G. Jacobson. 1987. Mesodermal metamerism in the teleost, Oryzias latipes (the Medaka). Journal of Morphology, 193:241-252.

Maybee, P. M. 1993. Phylogenetic interpretation of ontogenetic change: sorting out the actual and artefactual in an empirical case study of centrarchid fishes. Zoological Journal of the Linnean Society, 107:175-291.

Medawar, P. B. 1954. The significance of inductive relationships in the development of vertebrates. Journal of Embryology and Experimental Morphology, 2:172-174.

Meyer, A. and M. Schartl. 1999. Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Current Opinion in Cell Biology, 11:699-704.

Northcutt, R. G. and C. Gans. 1983. The genesis of neural crest and epidermal placodes: a reinterpretation of vertebrate origins. Quarterly Review of Biology, 58:1-28.

Northcutt, R. G. and C. Gans. 1983. The genesis of neural crest and epidermal placodes: a reinterpretation of vertebrate origins. Quarterly Review of Biology, 58:1-28.

Russell., E. S. 1916. Early theories on the origin of vertebrates, pp. 268-287. In Form and Function. The University of Chicago Press, Chicago.

Sanes, D. H., T. A. Reh and W. A. Harris (eds.). 2000. Development of the Nervous System. Academic Press, San Diego. 500 p.

Skrabanek, L. and K. H. Wolfe. 1998. Eukaryote genome duplication - where’s the evidence? Current Opinion in Genetics and Development, 8:694-700.

Smith, M. M. and B. K. Hall. 1990. Development and evolutionary origins of vertebrate skeletogenic and odontogenic tissues. Biological Reviews, 65:277-373.

Smith, M. M. and B. K. Hall. 1993. A developmental model for evolution of the vertebrate exoskeleton and teeth: the role of cranial and trunk neural crest. Evolutionary Biology, 27:387-449.

 

Webb, J. F. and D. M. Noden. 1993. Ectodermal placodes: contributions to the development of the vertebrate head. American Zoologist, 33:434-447.

 

 

GENERAL TEXT RESOURCES:

 

Benton, M. J. 1997. Vertebrate Palaeontology, 2nd ed. Chapman and Hall, London. 452 p.

Benton, M. J., ed. 1988. The Phylogeny and Classification of the Tetrapods: Systematics Association Special Volume Number 35. Oxford University Press, Oxford. 2 v.

Carroll, R. L. 1988. Vertebrate Paleontology and Evolution. Freeman, New York. 698 p.

De Beer, G. R. 1937. The Development of the Vertebrate Skull. Oxford University Press, Oxford. 554 p.

Goodrich, E. S. 1930. Studies on the Structure and Function of Vertebrates. Dover, New York. 837 p.

Hanken, J. and B. K. Hall. 1993. The Skull. The University of Chicago Press, Chicago. 3 v.,

Peyer, B. 1968. Comparative Odontology. University of Chicago Press, Chicago. 347 p.

Prothero, D. R. and R. M. Schoh (eds.). 1994. Major features of vertbrate evolution. Short Course in Paleontology, the Paleontological Society, 7:1-270.

Romer, A. S. 1956. Osteology of the Reptiles. University of Chicago Press, Chicago. 772 p.

Romer, A. S. 1966. Vertebrate Paleontology, 3rd ed. The University of Chicago Press, Chicago. 468 p.

 

 

 

 

 

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